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WASTE DISCHARGE REQU&MENTS ORDER NO. R5-2004-0020 -23- <br /> CITY OF MANTECA, CITY OFLATHROP AND DUTRA FARMS <br /> WASTEWATER QUALITY CONTROL FACILITY <br /> SAN JOAQUIN COUNTY <br /> b. The Bay/Delta Plan prescribes a minimum DO concentration of 6.0 mg/1 in the San Joaquin <br /> River inside the reach from Turner Cut to Stockton during the period 1 September through <br /> 30 November. This higher DO concentration was imposed to enhance aquatic conditions <br /> during critical migration periods for salmon. <br /> 56. The DO objectives are frequently not met in the San Joaquin River, leading to the Clean Water <br /> Act section 303(d) listing. In 1998,the Regional Board classified the DO impairment within the <br /> San Joaquin River as a Toxic Hot Spot, making it a high priority problem for correction. Since <br /> the spring of 1999, the Discharger and other stakeholders have participated in the steering <br /> committee for the development of the DO TMDL for the San Joaquin River in the Deep Water <br /> Ship Channel(DWSC). A TMDL implementation plan was submitted to the Regional Board in <br /> February 2003. Staff has developed and submitted to the USEPA in June 2003 a TMDL report <br /> for controlling the problem. The existing low DO conditions in the Stockton DWSC are partially <br /> the result of channel morphology, and point and non-point sources that are beyond the control of <br /> the Discharger. The Discharger will make a significant reduction in the magnitude of its <br /> contribution to the DO problem by implementation of more stringent ammonia and BOD effluent <br /> limitations through the construction of nitrification, denitrification, and tertiary coagulation and <br /> filtration facilities. These facilities will prevent ammonia toxicity and reduce the nitrogenous <br /> and carbonaceous biochemical oxygen demand that is presently exerted on the San Joaquin <br /> River. <br /> Based on the above information, further action by the Discharger to reduce its impact on the San <br /> Joaquin River DO concentration,beyond the requirements of this permit, will not be required by <br /> the Regional Board until such time as the TMDL for DO has been developed and approved by <br /> USEPA. This Order contains a provision to allow for the permit to be reopened to consider <br /> modification of effluent limitations after the DO TMDL is finalized. <br /> DISINFECTIONXILTRATION <br /> 57. The beneficial uses of the San Joaquin River include municipal supply,water contact recreational <br /> uses and agricultural irrigation supply, and there is, at times, less than 20:1 dilution. <br /> Recreational uses identified in the immediate vicinity of the WQCF outfall include boating, <br /> skiing, swimming, and fishing. A number of agricultural diversions have been identified through <br /> a search of the State Board, Water Rights Division database. Within an approximate one-mile <br /> radius of the outfall, there are approximately five agricultural diversions identified in the <br /> database. One of the agricultural diversions is just downstream and in the immediate vicinity of <br /> the outfall. <br /> To protect these beneficial uses, the Regional Board finds that the wastewater must be <br /> disinfected and adequately treated to prevent disease. The principal infectious agents <br /> (pathogens) that may be present in raw sewage may be classified into three broad groups: <br /> bacteria,parasites, and viruses. Tertiary treatment, consisting of chemical coagulation, <br /> sedimentation, and filtration, has been found to remove approximately 99.5% of viruses. <br />